- CEILS (Center for Education Innovation and Learning in the Life Sciences)
- Mildred E. Mathias Botanical Garden / Herbarium
- La Kretz Center for California Conservation Science
- Stunt Ranch Ecological Reserve
- Molecular Biology Institute (MBI)
- Institute for Quantitative and Computational Biosciences (QC Bio)
- Staglin IMHRO Center for Cognitive Neuroscience
- California Nanosystems Institute (CNSI)
- Center for Biological Physics (CBP)
- Center for Image & Vision Science
- Curtis Center for Mathematics & Teaching
- Galactic Center Group
- Institute of the Environment & Sustainability (IoES)
- Institute for Planets & Exoplanets (iPLEX)
- Institute for Pure & Applied Mathematics (IPAM)
- Joint Institute for Earth Systems Science and Engineering (JIFRESSE)
- California Center for Population Research
- Center for Behavior, Evolution, and Culture
- Center for Economic History
- Center for Language, Interaction, and Culture
- Center for the Study of Race, Ethnicity and Politics
- Center for the Study of Urban Poverty
- Center for the Study of Women
- César Chávez Digital Mural Lab Center
- Cotsen Institute of Archaeology
- Data Archives
- Institute for Research and Labor Employment
- National Center for the History in the Schools